AT4G31710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.888 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glutamate receptor 2.4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Putative ligand-gated ion channel subunit family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glutamate receptor 2.4 (GLR2.4); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), Extracellular ligand-binding receptor (InterPro:IPR001828), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 2.1 (TAIR:AT5G27100.1); Has 4751 Blast hits to 4701 proteins in 631 species: Archae - 76; Bacteria - 1218; Metazoa - 2222; Fungi - 0; Plants - 632; Viruses - 0; Other Eukaryotes - 603 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15349121..15352962 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99931.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.33 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 898 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSKYFQDVY IPRYLTKTKN KRKMKRHLND VVLVFLVFIF GVKLGKGQNT TIQVINVGVV TDVGTTASNL SLLAINMSLS DFYSSRPESR TRLLLNFADS 101: RDDVVGAAAA ALDLIKNKEV KAILGPRTTM QASFVIEVGQ KSQVPIISFS ATSPFLDSGR SPYFFRSTYD DSSQVQAISE IIKVFGWREV VPVYENNAFG 201: EGIMPGLTDA LQAINIRIPY RTVISPNATD DEISVDLLKL MTKPTRVFVV HMNRFLASRV FSKARETGLM KQGYAWILTN GVIDHLVLMN GTDIEAMQGV 301: IGIRTHFPIS EELQTFRSRL AKAFPVSELN IYGLRAYDAT TALAMAVEEA GTTNLTFSKM DGRNISDLEA LSVSEYGPKL IRSLSQIQFK GLSGDYHFVD 401: GQLHASVFEI VNVIDGGGIL VGFWTQDKGL VKDLSPSSGT TRTFSSWKNH LNPILWPGIT LTVPKGWEIP TNGKELQIGV PVGTFPQFVK VTTDPLTHET 501: IVTGFCIDFF EAVIQAMPYD VSHRFIPFGD DDGKTNDTTI LANRSSYVDF TLPYTTSGVG MVVPLKDNVA RSSLIFFKPL TPGLWGMTLG SFFVVGFVVW 601: ILEHRVNSEF TGPPQYQIST MFWFAFSIMV FAPRERVMSF TARVVVITCL SSLLTTQQLN PTETSIKNVL AKGGPVAYQR DSFVLGKLRE SGFPESRLVP 701: FTSPEKCEEL LNKGPSKGGV SAAFMEVPYV RVFLGQYCKK YKMVEVPFDV DGFGFVFPIG SPLVADVSRA ILKVAESNKA TQLETAWFKN IDKTCPDPMN 801: NPDPNPTVSF RKLSLDSFLL LFVAAATVCT LALLKFVICF LIQNRIILND EFYRGKRMKE MWLKFMESDG ESYISRVRST CPQVLIQPRE EDIDPING |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)