AT4G30510.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.764 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : homolog of yeast autophagy 18 (ATG18) B | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 (ATG18) B (ATATG18B); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G62770.3); Has 1236 Blast hits to 1191 proteins in 226 species: Archae - 0; Bacteria - 2; Metazoa - 531; Fungi - 404; Plants - 152; Viruses - 2; Other Eukaryotes - 145 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14905664..14906915 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26689.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.33 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.16 | ||||||||||||||||||||||||||||
| Length | 248 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLYSSDLLAI VGAGEQASLS PRRLCLFKTT TGLPLRELNF LTSILAVRMN KKRLVVVLLE KTFVYDLNTL VMLDTIDTVP NPKGLSAFSP SLEGCYLAVP 101: ASTTKGSVLV YNVMDLQSHS EIDAHRSPLA AIALSSNGMY IATGSEQGTL IRVHLVSEAT KSYSFRRGTY PSTIYSLSFG PSTQLPDILI ATSSSGSIHA 201: FSLSLAINQR SKRSTSFLGS VLPDSVSDAL DPAHHHVLQN AVSSGIRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)