AT4G30030.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 0.405 vacuole 0.291 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Eukaryotic aspartyl protease family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT4G30040.1); Has 1979 Blast hits to 1969 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 121; Plants - 1683; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:14682210..14683484 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 47235.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.24 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 424 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAITLLPLRI RASLLIIIFA LTCSKECTSH SRLTLRTKTQ ESSKIKIGYL HSKSTPASRL DNLWTVSHVT PIPNPAAFLA NISIGNPPVP QLLLIDTGSD 101: LTWIHCLPCK CYPQTIPFFH PSRSSTYRNA SCVSAPHAMP QIFRDEKTGN CQYHLRYRDF SNTRGILAEE KLTFETSDDG LISKQNIVFG CGQDNSGFTK 201: YSGVLGLGPG TFSIVTRNFG SKFSYCFGSL TNPTYPHNIL ILGNGAKIEG DPTPLQIFQD RYYLDLQAIS FGEKLLDIEP GTFQRYRSQG GTVIDTGCSP 301: TILAREAYET LSEEIDFLLG EVLRRVKDWD QYTTPCYEGN LKLDLYGFPV VTFHFAGGAE LALDVESLFV SSESGDSFCL AMTMNTFDDM SVIGAMAQQN 401: YNVGYNLRTM KVYFQRTDCE IIDS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)