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AT4G30030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.405
vacuole 0.291
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT4G30040.1); Has 1979 Blast hits to 1969 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 121; Plants - 1683; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G30030-MONOMEReggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:AL078464
EMBL:AL161576EMBL:CP002687EMBL:DQ056664EnsemblPlants:AT4G30030
EnsemblPlants:AT4G30030.1entrez:829126Gene3D:2.40.70.10GeneID:829126
GO:GO:0004190Gramene:AT4G30030.1hmmpanther:PTHR13683hmmpanther:PTHR13683:SF335
HOGENOM:HOG000237482InterPro:IPR001461InterPro:IPR001969InterPro:IPR021109
InterPro:IPR032799InterPro:IPR032861InterPro:IPR033121KEGG:ath:AT4G30030
MEROPS:A01.A51OMA:YFQRTDCPANTHER:PTHR13683Pfam:PF14541
Pfam:PF14543Pfscan:PS51767PhylomeDB:Q9SZV6PIR:T08979
PROSITE:PS00141PROSITE:PS51767Proteomes:UP000006548RefSeq:NP_194732.1
scanprosite:PS00141SMR:Q9SZV6STRING:3702.AT4G30030.1SUPFAM:SSF50630
TAIR:AT4G30030UniGene:At.62427UniProt:Q9SZV6
Coordinates (TAIR10) chr4:-:14682210..14683484
Molecular Weight (calculated) 47235.40 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.12
Length 424 amino acids
Sequence (TAIR10)
(BLAST)
001: MAITLLPLRI RASLLIIIFA LTCSKECTSH SRLTLRTKTQ ESSKIKIGYL HSKSTPASRL DNLWTVSHVT PIPNPAAFLA NISIGNPPVP QLLLIDTGSD
101: LTWIHCLPCK CYPQTIPFFH PSRSSTYRNA SCVSAPHAMP QIFRDEKTGN CQYHLRYRDF SNTRGILAEE KLTFETSDDG LISKQNIVFG CGQDNSGFTK
201: YSGVLGLGPG TFSIVTRNFG SKFSYCFGSL TNPTYPHNIL ILGNGAKIEG DPTPLQIFQD RYYLDLQAIS FGEKLLDIEP GTFQRYRSQG GTVIDTGCSP
301: TILAREAYET LSEEIDFLLG EVLRRVKDWD QYTTPCYEGN LKLDLYGFPV VTFHFAGGAE LALDVESLFV SSESGDSFCL AMTMNTFDDM SVIGAMAQQN
401: YNVGYNLRTM KVYFQRTDCE IIDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)