AT4G29880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.907 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plant intracellular ras group-related LRR 7 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes PIRL7, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
plant intracellular ras group-related LRR 7 (PIRL7); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 6 (TAIR:AT2G19330.1); Has 62582 Blast hits to 28443 proteins in 1064 species: Archae - 25; Bacteria - 6458; Metazoa - 27380; Fungi - 2135; Plants - 22921; Viruses - 26; Other Eukaryotes - 3637 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14607078..14608379 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41992.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.92 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||
| Length | 373 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MICEDAYQYQ QLHGQKDHMM TMMMMDLSTS PPSSPLSPSL SPKSPSYNNN EEERLEVVNL SGMALQSLPN PSLNLANICK LDLSNNHIKK IPESLTARLL 101: NLIALDIHSN QIKALPNSIG CLSKLKILNV SGNFLVSLPQ TIQNCRSLEE LNANFNELIR LPDNIGLELT NLKKLCVNSN KLISLPATIT CLTSLRVLDA 201: RLNCLMILPE DLENLINLEI LNVSQNFQYL SALPSSIGLL LNLLELDISY NKITVLPESI GCMRRLRKLS AEGNPLVSPP IEVVEQSLHA VREYLSQKMN 301: GKLVNTAAKK KTWGFRKLVK YGTFNGRSRV WTREEREGLI MPEYRPIDIL TSTKFPVTCS PRRLFSPRTY FSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)