AT4G29440.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of Vps4 activity in the MVB pathway protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of Vps4 activity in the MVB pathway protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT2G19710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14473942..14477683 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 116106.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.31 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.98 | ||||||||||||||||||||||||||||
| Length | 1062 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MNKKDTQIKQ LRRELAHLLE SGQTQTAKIR VEHVVREEKT VAAYELVGIY CELLVARLGV IDSQKTCPND LKEAVASVLY ASQRLTDVGE LSDIVKHFSA 0101: KYGKDFVSAA IGLQPDSGVS RLLVEKLSVK APDGPTKIKI LTEIATQHNV TWEAESLVES DPKETMSASG ASSSVSQPAT GIKSESSRIQ NNQPPVFQAA 0201: ATVNVSQNSY ATDGRSSSRM TSTDFNVGKT PDHYHQDPKP SGDRVDGREH RDHNPGHGDT SPFETKFVDA TSAARAAAES AERASFAARR AAELSSKERM 0301: MMMQNSTESR NSSSYENLRS NPPHSRTSSS NMQGGGFGKE ELLKSNNRQV DQSTTTTRAE SSKKTVDELS ENTSWRRGHS RENSLEMRPN DSFAKIGREK 0401: QQPGMDDINL SSSADVLNKK QSSRASSHSP SSNFSDDNDV TALDHIDSPS IFEENKFQST VGDRESYNDS PVVVVAPAFD DYSSFFDKPQ FDTEDAYHDE 0501: PEQGLGFSLL GSSSKTSDHM PTEISSWSLE GHKDLGKLSS ASTSQVLEKE KPSSPPTFDD GPTSPPASLH EPEPSAKFDD YDRDSESEED NLGRLSGRAE 0601: GKSKLTAQKS HMSEGPDDLG RYFFPSDTED QGDDSKTQEE SDAETPTGLK FGPLASGLEN ETTLPSYGSS PPRDKTSSKS IKEYLPTEVD PSRSSSLQTA 0701: SSSSIRNELY TQKASNSDKR PSSIPPDSSS SDDESDMELP KRVSFRYQEK RTESRTRPTH LHSGVSHKDL EEEIPTRAST RSQDRRTHKT TPASASASYF 0801: HTMSSDDEDE KEVHRDTAHI QTRPYISISR RTKGQERRPS LVTAKIDKVS FDEESPPKLS PEAKPLTKQQ GSASSLSYLP KTEKVSHDQE SHPKLGLGAK 0901: PLIKQQGSAS SLSFLPKTNK ASPDQDSPPK LVPKEKPAAK QRGSASSLSF LPKTDKASPD QDSPPKLLPK EKPAAKQQGS ATSSSSLPKT EKISHYRESP 1001: SKLTPEAKSM AKQEGLASSS SSLPKTVTSP DPETPAKEKA SHVHPKLPDY DDIFAKLGAL RR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)