AT4G29420.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : F-box/RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 59 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:14470715..14472204 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50881.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.96 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 446 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDELPPELWI KILSRINDSE SLARCRVASK TLNSLSREVR AVNLICTWSR YLKSRSIVVV TPFKTIFRSL IENSSKIRSI SVGVDKALKG MSFDDFNEED 101: SKDLYLTDVE FVKEWLPRVR EDLENLSISD FWIQSCWRKS DILALISSNC SKLVKLEVKN AWLSVVGLTE MPNLRYLTLE FIRLDDENLE KVNDCFPFLQ 201: ELNLIGVGGL KEPRIHFLHL KSCHWTVSNA PLSLAIVAPN LLELKLKCNK PKSLLVETPK LVQCHLSVED AEGVSFGEFQ DLKTLELVSP DMYRLISNIS 301: FGNKIKKLAV DSVKSIEQSE RLELGLATIL KAFPGITSLS LSPRTWSDIE THFQSQGGLG DMKGTDSLKQ ITARVQMSDH TNVHQTVSFI RSIVNKYRGL 401: TDMRLMIHQD KDPRVRSNLI STCMMSNPRV RWKWGMWAEG GEDMWV |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)