AT4G29310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.936 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1005) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1005); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1005) (TAIR:AT1G10020.1); Has 138 Blast hits to 138 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14437892..14439609 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45658.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.63 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||
| Length | 424 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPCPFVRLT IDSLALRLPE TATNKQIGGE VHPSSTPCYC KLRIKHFPSQ KALLPLSSFS DASSPPESST SAPGFHLDAD AIRRISGKKI SLRVSVYAGR 101: TGHTCGVASG KLLGKVEVAV DLAAALSRTV AFHNGWKKLG GDGDKPSARL HLLVCAEPDP RFVFQFGGEP ECSPVVYQIQ DNLKQPVFSC KFSSDRNGRS 201: RSLPSGFTYS SRGWITRTLS GDQWEKKQAR ERKGWMITIH DLSGSPVAAA SMITPFVASP GSDRVSRSNP GAWLILRPHG TCVSSWKPWG RLEAWRERGA 301: IDGLGYKFEL VRDNSTSTGI PIAEGTMSTK QGGKFSIDRR VSGQGESPAI SSPVKGFVMG SSVEGEGKVS KPVVHVGAQH VTCMADAALF VALSAAVDLS 401: VDACQLFSRK LRKELCHDDQ SSLT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)