AT4G29090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.982 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribonuclease H-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribonuclease H-like superfamily protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity, nucleic acid binding; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G34320.1); Has 2218 Blast hits to 2138 proteins in 33 species: Archae - 2; Bacteria - 6; Metazoa - 6; Fungi - 0; Plants - 2203; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14333528..14335255 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66716.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.52 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||
| Length | 575 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALPTYTMAC FLLPKTVCKQ IISVLADFWW RNKQEAKGMH WKAWDHLSCY KAEGGIGFKD IEAFNLALLG KQMWRMLSRP ESLMAKVFKS RYFHKSDPLN 101: APLGSRPSFV WKSIHASQEI LRQGARAVVG NGEDIIIWRH KWLDSKPASA ALRMQRVPPQ EYASVSSILK VSDLIDESGR EWRKDVIEML FPEVERKLIG 201: ELRPGGRRIL DSYTWDYTSS GDYTVKSGYW VLTQIINKRS SPQEVSEPSL NPIYQKIWKS QTSPKIQHFL WKCLSNSLPV AGALAYRHLS KESACIRCPS 301: CKETVNHLLF KCTFARLTWA ISSIPIPLGG EWADSIYVNL YWVFNLGNGN PQWEKASQLV PWLLWRLWKN RNELVFRGRE FNAQEVLRRA EDDLEEWRIR 401: TEAESCGTKP QVNRSSCGRW RPPPHQWVKC NTDATWNRDN ERCGIGWVLR NEKGEVKWMG ARALPKLKSV LEAELEAMRW AVLSLSRFQY NYVIFESDSQ 501: VLIEILNNDE IWPSLKPTIQ DLQRLLSQFT EVKFVFIPRE GNTLAERVAR ESLSFLNYDP KLYSIVPSWA RSSMD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)