AT4G29060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : elongation factor Ts family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 2726 (emb2726); FUNCTIONS IN: RNA binding, translation elongation factor activity; INVOLVED IN: translational elongation, response to cadmium ion, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Translation elongation factor EFTs/EF1B (InterPro:IPR001816), Translation elongation factor EFTs/EF1B, dimerisation (InterPro:IPR014039), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor Ts, conserved site (InterPro:IPR018101), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: translation elongation factor Ts (EF-Ts), putative (TAIR:AT4G11120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14317744..14321315 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 103788.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 953 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATITPSSIS NAWLIPGASF TVKKSDCSIK CSFSRKAGKQ ILSSTQRLVL PLSTSLRLFP THGRQFVLHP HRRATGTDVV AAVEEQDSTP VVAEDKETVA 101: SEKSDAPAPT SQSRGTARPG RKSEMPAVKN EELVPGATFT GKVRAIQPFG AFVDFGAFTD GLVHVSQLSD NFVKDVSSVV TIGQEVKVRL VEADIESKRI 201: SLTMRENDDP PKRQSGGSDK PRSGGKRDGS KGGGQRKGEG FNSKFAKGQM LDGVVKNLTR SGAFITIGEG EEGFLPTAEE ADDGIGSMMM GGSSLQAGQE 301: VKVRVLRIAR GRVTLTMKEE DDGKFDETTT QGVVHTATNP FMLAFRKNEE IAAFLDKREE EAEKPPVETP VEPEAEASVT SAEVEESVCV PAEVTSEEVP 401: SSETPKVVEE EVIATKAEDD SPEKEEQTET LAAAAEAEEV VPPIPETKSE EEIVENSIPP NSATDEVSSP EALASEEVEK EQVVAETPVD EVKTPAPVVT 501: EASSEESGNT ATAESIKGIS PALVKQLREE TGAGMMDCKN ALSESEGDMV KAQEYLRKKG LASADKKASR ATSEGRIGAY IHDSRIGVLL EVNCETDFVS 601: RGDIFKELVD DLAMQVAACP QVEYLVTEDV SEEIVKKEKE IEMQKEDLLS KPEQIREKIV DGRIKKRLDS LALLEQPYIK DDKVIVKDLV KQRIATIGEN 701: IKVKRFVRYT LGEGLEKKSQ DFAAEVAAQT AAKPKAKEEP KAEEAKEAVA SPPTTVVSAA LVKQLREETG AGMMDCKKAL AATGGDLEKA QEFLRKKGLS 801: SADKKSSRLA SEGRIGSYIH DSRIGVLIEV NCETDFVGRS EKFKELVDDL AMQAVANPQV QYVSIEDIPE EIKQKEKEIE MQREDLLSKP ENIREKIVEG 901: RISKRLGEWA LLEQPYIKDD SVLVKDLVKQ TVATLGENIK VRRFVKFTLG EDN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)