AT4G28811.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G28800.1); Has 3934 Blast hits to 3888 proteins in 271 species: Archae - 0; Bacteria - 6; Metazoa - 507; Fungi - 186; Plants - 3207; Viruses - 3; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14225335..14227840 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59689.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.63 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 544 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEDDIVELL WNGQVVRTSQ PQRPSSGKPS PTPPILRGSG SGSGEENAPL PLPLLQPPRP LHHQNLFIRE EEMSSWLHYS YTGVTSTPAT HPQSSVSLPP 101: PPPIAPSEDD VVELLWKSGQ VVQSIQTQRP IPPPIFRGSG SGGGEETVLP LPPLHPSHQN IFIQEDEMAS WLYHPLRQDY FSSGVASTSA TRPQSSASLA 201: PTPPPPSVPY GQIPVERRTE NFMNFLRLRG NIFSGGRVEA GPVVIESTQI GSSATPSSSA AESCVIPATH GTESRAAAIT GVSRTFAVPG LGRRGKEVAT 301: ETAGTSYSGV NKAETERVQI QPERETKITE DKKREETIAE IQGTEEAHGS TSRKRSRAAD MHNLSERRRR ERINERMKTL QELLPRCRKT DKVSMLEDVI 401: EYVKSLQLQI QMMSMGHGMM PPMMHEGNTQ QFMPHMAMGM KGMNRPPPFV PFPGKTFPRP GHMAGVGPSY PALRYPFPDT QASDLSRVHV PSLHSNPVPN 501: QPRFPAYINP YSQFVGLHQM QQPPLPLQGQ PTSQPSFSHA STSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)