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AT4G28710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Myosin family protein with Dil domain
Curator
Summary (TAIR10)
member of Myosin-like proteins
Computational
Description (TAIR10)
XIH; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin 2 (TAIR:AT5G43900.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5022eggNOG:KOG0160EMBL:AL035353EMBL:AL161573
EMBL:CP002687EnsemblPlants:AT4G28710EnsemblPlants:AT4G28710.1entrez:828991
GeneID:828991Genevisible:F4JM19GO:GO:0003774GO:GO:0005524
GO:GO:0016459GO:GO:0030048Gramene:AT4G28710.1hmmpanther:PTHR13140
hmmpanther:PTHR13140:SF256HOGENOM:HOG000029608InParanoid:F4JM19InterPro:IPR000048
InterPro:IPR001609InterPro:IPR002710InterPro:IPR004009InterPro:IPR027417
iPTMnet:F4JM19KEGG:ath:AT4G28710ncoils:CoilOMA:RTDMEES
PaxDb:F4JM19Pfam:F4JM19Pfam:PF00063Pfam:PF00612
Pfam:PF01843Pfam:PF02736Pfscan:PS50096Pfscan:PS51126
Pfscan:PS51456PIR:F85334PIR:T04528PRIDE:F4JM19
PRINTS:PR00193PRO:PR:F4JM19PROSITE:PS50096PROSITE:PS51126
PROSITE:PS51456ProteinModelPortal:F4JM19Proteomes:UP000006548RefSeq:NP_194600.2
SMART:SM00015SMART:SM00242SMART:SM01132STRING:3702.AT4G28710.1
SUPFAM:SSF52540TAIR:AT4G28710tair10-symbols:ATXIHtair10-symbols:XIH
UniGene:At.31995UniProt:F4JM19
Coordinates (TAIR10) chr4:+:14172280..14181771
Molecular Weight (calculated) 172164.00 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.40
Length 1516 amino acids
Sequence (TAIR10)
(BLAST)
0001: MACTTVNVGS CVWVEDPEVA WIDGEVIEVK GSDIKVKCTS GKTVAIKVSS AYPKDVEAPA SGVDDMTRLA YLHEPGVLQN MKSRFDINEI YTYTGNILIA
0101: VNPFRRLPHL YNNHMMQQYK GAGFGELSPH PFAVADAAYR QMKNQGISQS ILVSGESGAG KTETTKLLMQ YLADMGGRAV SEGRTVEKKV LESNPVLEAF
0201: GNAKTVRNNN SSRFGKFVEI QFDQRGRISG AAIRTYLLER SRVCQVSDPE RNYHCFYMLC AAPPEDIKKW KLADPRKFHY LNQSQCIELE RMDDAKEYRE
0301: TRKAMDVVGI NSEEQEAIFQ VVAAILHLGN VEFGKGKEAD SSAPKDDTSN YHLKTAAELF MCDEQALEDS LCKRVIVTRG ETITKCLDQE SAALSRDALA
0401: KTVYSRLFDW IVNKINDSIG QDPDSEYLIG VLDIYGFESF KTNSFEQFCI NLTNEKLQQH FNQHVFKMEQ DEYNKEEIDW SYIEFVDNQE ILDLIEKKAG
0501: GIISLLNEAC MFPRATHETF AEKMYQTFKD HKHFSKPKLS RTDFTICHYA GDVTYQTEQF LEKNKDYVVA EHQTLLNASR CAFVASLFPL LAEDANKKSK
0601: FSSISSRFKQ QLVTLLETLS TTEPHYIRCV KPNNLLKPLI FENQNVLQQL RCGGVMEAIR ISCAGFPTRK KFEEFLERFS VLAPEVLDKS TDGWPLSSTD
0701: DVACKKLLEK VALQGYQIGK TKVFLRAGQM ADLDARRNEV LGRAASRIQR KFRSYLSRKT FLMLRKVATN MQAVCRGQLS RLIFEGLRRD AAVLEIQRDI
0801: RMHLARKSYK ELYFAAVSIQ LGIRGMASRG RLRFQRQDKA AIMIQSHCRK FLAQLHYQRL KKAAITTQSA WRARLARKEL RKLKMAAKET GVLEAAKSKL
0901: EKQVEELTWK LQLEKRMRTD MEESKTQENA KLRSALEEMQ LQFKETKALH LQEVEAAKKM AETVPVLQEV PVVDTELVEK LTSENEKLKS LVSSLDQKID
1001: ETEKKFEERS KINEERLKQA IEAETTIVNL KTAVHELQEK ILDVESENKI LRQKSLIQAS GHLPPTPVKG SQNGHFSSKE SPFNGSEIET LARTQEQESD
1101: AKTRRYHLDR QRENIGALIN CVVNNIGFNQ GKPVAAFTIY KCLLHWKSFE AERTSVFDRL VQMIGSAIKD EGDNEHLAYW LSNTSTLLFM IQQSLKPGAT
1201: PQQKTPVSTS LFGRMAMGFR SAPSSAETSA AAEAAAAAVI RPVVAKDPAL LFKQQLTAYV EKIFGMIRDN LKNELQTLLS LCIQAPRTST GRSLRSFRSS
1301: KTMRNNSPLD HWNGIYDGLN AILSTLQENF VPPVLIQNIF IQTFSFINVQ LFNSLLLRRE CCTFSNGEFV KSGLALLEEW CNETTEEYAG SSWDELKHIR
1401: QAVGFMVIHK KYRISYDDIA HDLCPILSVQ QLYRICTLYW DDSYNTRSVS QDVIANMRVL MTEDSNNADS SAFLLDEDSS IPFSADDLSS SMKEKDFAEM
1501: KPAEELEENP AFSFLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)