AT4G28706.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : pfkB-like carbohydrate kinase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT5G43910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:14167805..14170619 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43082.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.26 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.00 | ||||||||||||||||||||||||||||||||||||
| Length | 401 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLCFTHVPPL PLFSTSGIYL PASRRFTRIR MSSSSSIDSV PPPPDNAIVL GCGGIAVDFL ATVDSYPQAD DKIRSTSLKV QGGGNAANAL TCAARLGLNS 101: RLISKVANDS QGKGMLEELE ADGVDTSFIV VSKEGNSPFT YILVDNQTKT RTCIHTPGDP PMLPTDLSQS SMLSALDRAS IVYFDVRLHE TALVIAKEAS 201: RKKIPILVDT EKKRDGLDDL LPFADYVVCP ENFPQTWTEV SSTPGALVSM LLRLPKLKFV IVTSGEHGCL MVQRASKEVF ESQETDIESL LETLKHRKDS 301: TTTFPTCVSS ETTKLKANGV GTMTGRLFLG TAEKIPPEEL VDTTGAGDAF IGAVLYAICA GMPPEKMLPF AAQVAGCSCR ALGARTGLPH RTDPRLVPFL 401: V |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)