AT4G28640.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : indole-3-acetic acid inducible 11 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Auxin induced gene, IAA11 (IAA11). | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
indole-3-acetic acid inducible 11 (IAA11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to cyclopentenone; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: auxin-induced protein 13 (TAIR:AT2G33310.2); Has 2381 Blast hits to 2380 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2381; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14142288..14143928 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33335.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.07 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 302 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGGSASGSA SALSNDENLV VSCEDSSSPI GNELELGLTL SLGRKGYRDC RVYADDSSSS SSSSSLSRAS VIAGIKRTAD SMAATSGQVV GWPPIRTYRM 101: NSMVNQAKAS ATEDPNLEIS QAVNKNRSDS TKMRNSMFVK VTMDGIPIGR KIDLNAHKCY ESLSNTLEEM FLKPKLGSRT LETDGHMETP VKILPDGSSG 201: LVLTYEDKEG DWMLVGDVPW GMFIGSVRRL RIMKTSEATG KDDIMKQIII YEEPFMFEAV IRQITDQRED KNIVRSFFFF SPLYSFFFGS AIFLLVSYMF 301: SL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)