AT4G28420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tyrosine transaminase family protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tyrosine transaminase family protein; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity; INVOLVED IN: cellular amino acid and derivative metabolic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT2G20610.1); Has 41170 Blast hits to 41169 proteins in 3031 species: Archae - 1037; Bacteria - 30017; Metazoa - 726; Fungi - 773; Plants - 1311; Viruses - 0; Other Eukaryotes - 7306 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14055687..14057143 | ||||||||
| Molecular Weight (calculated) | 43021.20 Da | ||||||||
| IEP (calculated) | 6.76 | ||||||||
| GRAVY (calculated) | -0.06 | ||||||||
| Length | 389 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MNHNSNLVLP SHQTETQTQD ETDISVWRFR GSDNAAKASS VTMRVIVYKL FDECSLDVKK PLLPLAHGDP SVYPCYRTSI LVENAVVDVL RSGKGNSYGP 101: AAGILPARQA VADYVNRDLT NKVKPNDVFI TVGCNQGIEV VLQSLARPNA NILLPRPSYP HYEARAVYSG LEVRKFDLLP EKEWEIDLPG IEAMADENTV 201: AMVIINPNNP CGNVYSYDHL KKVAETAKKL GIMVITDEVY CQTIFGDKPF VPMGEFSSIT PVITLGGISK GWIVPGWRIG WIALNDPRGI LKSTGMVQSI 301: QQNLDITPDA TTIVQAALPE ILGKANKELF AKKNSMLKQN VELVCDRLKE IPCLVCNKKP ESCTYLLVPP PTSLILFHDS RSIWMILIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)