AT4G28300.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1421) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with 13.6% proline amino acids that is predicted to localize to the cell wall. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF1421); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1421 (InterPro:IPR010820); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1421) (TAIR:AT5G14540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14015414..14016823 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 47996.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.45 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.94 | ||||||||||||||||||||||||
| Length | 438 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARSSVFPTS SYSPPEDSLS QDITDTVERT MKMYADNMMR FLEGLSSRLS QLELYCYNLD KTIGEMRSEL THAHEDADVK LRSLDKHLQE VHRSVQILRD 101: KQELADTQKE LAKLQLVQKE SSSSSHSQHG EDRVATPVPE PKKSENTSDA HNQQLALALP HQIAPQPQVQ PQPQPQQHQY YMPPPPTQLQ NTPAPVPVST 201: PPSQLQAPPA QSQFMPPPPA PSHPSSAQTQ SFPQYQQNWP PQPQARPQSS GGYPTYSPAP PGNQPPVESL PSSMQMQSPY SGPPQQSMQA YGYGAAPPPQ 301: APPQQTKMSY SPQTGDGYLP SGPPPPSGYA NAMYEGGRMQ YPPPQPQQQQ QQAHYLQGPQ GGGYSPQPHQ AGGGNIGAPP VLRSKYGELI EKLVSMGFRG 401: DHVMAVIQRM EESGQPIDFN TLLDRLSGQS SGGPPRGW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)