AT4G28000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.502 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G52882.1); Has 39856 Blast hits to 37451 proteins in 3236 species: Archae - 1544; Bacteria - 17865; Metazoa - 4891; Fungi - 3526; Plants - 3328; Viruses - 34; Other Eukaryotes - 8668 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13925456..13929280 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92422.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.28 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||
| Length | 830 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEQKSVLFSA LGVGVGLGIG LASGQSLGKW ANGSISAEDG LTGEKIEQEL VRQIVDGRES SVTFDEFPYY LSEKTRLLLT SAAYVHLKQS DISKHTRNLA 101: PGSKAILLSG PAEFYQQMLA KALAHYFESK LLLLDITDFS IKIQSKYGCV KKEPSHKRSI SELTMDKMSN LMGSISVLSQ KEATRGTLRR HTSGNDLHSR 201: GFDVTSQPPR LKRNASAASD MSSISSRSAT SVSASSKRSA NLCFDERLFL QSLYKVLVSI SETNPIIIYL RDVEKLCQSE RFYKLFQRLL TKLSGPVLVL 301: GSRLLEPEDD CQEVGEGISA LFPYNIEIRP PEDENQLMSW KTRFEDDMKV IQFQDNKNHI AEVLAANDLE CDDLGSICHA DTMFLSSHIE EIVVSAISYH 401: LMNNKEPEYK NGRLVISSNS LSHGLNILQE GQGCFEDSLK LDTNIDSKVE EGEGITKSES KSETTVPENK NESDTSIPAA KNECPLPPKA PEVAPDNEFE 501: KRIRPEVIPA NEIGVTFADI GSLDETKESL QELVMLPLRR PDLFKGGLLK PCRGILLFGP PGTGKTMMAK AIANEAGASF INVSMSTITS KWFGEDEKNV 601: RALFTLAAKV SPTIIFVDEV DSMLGQRTRV GEHEAMRKIK NEFMTHWDGL MSNAGDRILV LAATNRPFDL DEAIIRRFER RIMVGLPSVE SREKILRTLL 701: SKEKTENLDF QELAQMTDGY SGSDLKNFCT TAAYRPVREL IKQECLKDQE RRKREEAEKN SEEGSEAKEE VSEERGITLR PLSMEDMKVA KSQVAASFAA 801: EGAGMNELKQ WNDLYGEGGS RKKEQLSYFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)