AT4G27980.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.624 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Domain of unknown function (DUF3444) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT3G04960.1); Has 76225 Blast hits to 44081 proteins in 2453 species: Archae - 1073; Bacteria - 11388; Metazoa - 35898; Fungi - 5511; Plants - 3905; Viruses - 204; Other Eukaryotes - 18246 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:13921677..13923374 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65399.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.54 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||
| Length | 565 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMQGDSVES DVTEQNSEGY LKILDKIQAK SSSIFEFSLQ FDDVVASLEK KEERLRVVEM KEKEIGLLEE SISRRLSVLE EKEIETDLRL VIEASIMRLV 101: LEKQSEDLVT QLKTEENKLG LFLRSTTKKL EELVSEFDGR KEEACRVSEK LCELEKAEKE FHLKQRAETE RRNEESEARE KDLRALEEAV KEKTAELKRK 201: EETLELKMKE EAEKLREETE LMRKGLEIKE KTLEKRLKEL ELKQMELEET SRPQLVEAES RKRSNLEIEP PLLVKNDSDA DSCTPQAKKQ KSQEANDGDI 301: EGIVCTDKSY EDPNSLTCPD TKLNDFSKSM SSFAVDQVWA LYDPRDDMPR NYAQIREIFE SQLSLQVTLL EHVKTTKDEQ SILSGCGRFE YGDTEIKSHL 401: MFAHEMDHIK SAEEVIVNPR KGETWALFSD WNASWNSHLE LQELPYRYDF VEVISEFDDL IGIQVAYMGR VEGYESVFNH AEQYGCIKIV IPPAEMQRFS 501: HKVESVKLSG KEEEGIPFRS FKLNPAAMPR YYHVLEEVVE TEIQIKDPTV VHQNGSTKDL PIIID |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)