AT4G27850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.834 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycine-rich protein family | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycine-rich protein family; Has 206606 Blast hits to 72651 proteins in 2543 species: Archae - 612; Bacteria - 46078; Metazoa - 85704; Fungi - 21721; Plants - 20357; Viruses - 5309; Other Eukaryotes - 26825 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13870382..13873509 | ||||||||||||||||||||
| Molecular Weight (calculated) | 63589.80 Da | ||||||||||||||||||||
| IEP (calculated) | 9.73 | ||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||
| Length | 577 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPTTPYSHE DDVDSTHSSN STASDGTERE ENNNNESQEE TRTSRSPNEA LDEIRRQQTH NLYCPKCKTN ITKSAELVVK NQETDSYKTK AYVLWVPLVI 101: SPFEFPTLHL LLSFLTGLWK KLKTLVPNCL SRLSPNFLPL RYLLVAVLLL LSVIVLWSSD PPLPPPPPPY PSPLPPPPSP SPTPGPDSPL PSPGPDSPLP 201: LPGPPPSPSP TPGPDSPLPS PGPDSPLPLP GPPPSSSPTP GPDSPLPSPG PPPSPSPTPG PDSPLPSPGP DSPLPSPGPD PPLPSPGPHL YEKNRWLIHF 301: PSIKYLSVFS LLFLAILTLP WASISPIFNN LIAAIKTWSK RVIPQTFIKP QPRLSSTDKA LGIFTCKITI TGDHHLCHLS LTLFLIYLLK MTKTHLGAKK 401: PSRLILSWIT KCHFQMFCGN PMWIRPGNLI AKSKGNVEIY RGSSSKPLTN VEIYRGSSSK PLTKRARHLE EYCVRRSYRV HHKPRCRILR CRFRSFNSIT 501: DKGHYKAAVV LAASLVCVIS LSFAKAYAFR MQKLRTMAEY TGMAFGASAF SFIASRIVSD IFEKFGFHEL AAEYRKD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)