AT4G27690.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : vacuolar protein sorting 26B | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
vacuolar protein sorting 26B (VPS26B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 26A (TAIR:AT5G53530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13824324..13826235 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32110.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.53 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||
| Length | 275 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKENGQTAL VPLFHSQDTI SGKVCIEPYQ GKKVEHNGVK VELLGQIEMY FDRGNFYDFT SLVRELDVPG EIYERKTYPF EFPTVEMPYE TYNGVNVRLR 101: YVLKVTVTRG YAGSILEYQE LVVRNYAPLP DINNSIKMEV GIEDCLHIEF EYNKSKYHLK DVILGKIYFL LVRIKMKNMD LEIRRRESTG AGANTHVETE 201: TLAKFELMDG TPVRGESIPV RLFLAPYDLT PTHRNINNKF SVKYYLNLVL VDEEDRRYFK QQEITLYRLK EDASS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)