AT4G27595.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF827) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF827); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT1G65010.1); Has 310032 Blast hits to 139242 proteins in 3916 species: Archae - 4716; Bacteria - 75781; Metazoa - 114609; Fungi - 21186; Plants - 16814; Viruses - 1394; Other Eukaryotes - 75532 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:13772819..13777128 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 138960.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.74 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||||||
| Length | 1221 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASRTKTGLM ETPRSKPSPP TPRVSKPTVT KSDGNSPSPV QSTRLSIDRS PQTVNSKPVS DRRTARVPTP PEANYFLIII CMAFQKSQSR LGKGTGLLVQ 0101: QTQEDLRKAN EQIERLKKDK AKALDDLKES EKLTKEANEK LREALAAQHH AEKSSEIEKF RAVELEQAGI EAVHKKEVSW KKEVESIRSQ HALDISALLS 0201: TTEELHRIKQ ELAMTADAKN KALSHAEEAT KIAENQAEKA EILSSELSRL KALVGSDEQK KSNEDDEVVS KLKSEIEMLR GKLEKVSILE NTLKDQEESI 0301: ELLHVDLQAA KMVESYANNL AAEWKNEVDK QVEESKELKT SASESLDLAM KQLEENNHAL HEAELGNATL KEKVESLVTT IGRQENDLEE SQHQVCISKE 0401: ETSKLEKLVE SIKSDLETTQ GEKVRALLNE KTATSQIQNL LSEKTELATE LENCKKEEEK IKKAMESLTL DLQEVSVEAK EAKEKLLTCQ AELELCGVQI 0501: ESLKLAEKDT NEKHGKMLED ARNEIDGLKS SLENTENEFF NSKTEWEQRE LHLMLCVKKL EDGNFSVQEE LSKVKNLLHL KEVEACAAKE EDAKMQTNRK 0601: ELEEEIKDLQ EIVEVAKADS MKLKESLVEK EDELKNTAAE NRKLREMEVS SIDKIDQLSK VKESLVDKET KLQNIIQEAE ELRVKEIDYL KKIEELSAAK 0701: ESLVEKETKL LSTVQEAEEL RRRELACLKK IEELSAVNER LVDKETKLQS SIQEVEVLKE REAENIKQIE ELSLSNERLV EKEAKLQTVV QENEELREKE 0801: SAYQKKIEEL SKVDEIFADR EAKLQSSTQE NEELREREVA YLKKIEELAK LQENLLDKEN ELHDMVLEIE DLKAKDSLAE KKIEELSNLN KSLLVKESEL 0901: QDVVFENEKL KSKEALSLKT TEELSDVKQT LADKEKELKT AVVENEKLKA QAASSFQKIE ELKNLKQSLL DKENELEGVF QANEELKAKE ASSLKKIDEL 1001: LHLEQSWIDK GNENQELKVR EASAAKRIEE LSKMKESLLD KELQTVIHDN YELKAREASA LKKIEELSKL LEEASSTHEK GEEITNTNPF DNSTGEQKVQ 1101: ESPLEAIDRH LKDDTTIHWS AHNVQVIGKG EKGKDKDTVE SEVYHLEKRE ASSERDTEHD FAEEEVDSKA EGSENFDQLS NGLSLAEQTE DVVSKDQQQK 1201: KKKPLLRKFG NLLKKKSSSQ K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)