AT4G27430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : COP1-interacting protein 7 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
COP1-interacting protein 7 (CIP7); FUNCTIONS IN: transcription activator activity; INVOLVED IN: chlorophyll biosynthetic process, response to light stimulus, anthocyanin biosynthetic process; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR class), putative (TAIR:AT1G61100.1); Has 13314 Blast hits to 9115 proteins in 689 species: Archae - 12; Bacteria - 824; Metazoa - 5362; Fungi - 1404; Plants - 789; Viruses - 71; Other Eukaryotes - 4852 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13718817..13722736 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 118431.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.94 | ||||||||||||||||||||||||||||||||||||
| Length | 1058 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDPRTRLDYA LFQLTPTRTR CDLVIFSGGE NEKLASGIFQ PFVTHLKSVS DQISKGGYSV TLRPSSVGVP WFTKVTLQRF VRFVTTPEVL ERSVTLEKEI 0101: EQIEDSIQAN AAAIAGEAEG NELGGTWTSQ KSTALSKTKG ETDGDTVEEN SKVGLQRVLE NRKAALCKEQ AMAYARALVV GFELDYMDDL FSFADAFGAS 0201: RLREACVNFV DLCKRKNEDR MWVDQITAMQ AFPRPELTFM GDSGIVLAGE ENDLLNATNV KHGNSMDASS QGSFETGQEG RAQMAMPWPN QFPQYMQNFQ 0301: GHGYPPPYMF PGMQGQSPYF HGNMQWPVNM GDVESNEKSS KKKKKKKKNK KKSKQDESAE PSDNSSTETE SEDGNEGKKQ SRKVVIRNIN YITSKRNGAK 0401: ESDSDESGEE EGFVDGDSIK QQVEEAIGSV ERRHKSTSHR QRKHKSHNGD DDSSNKETKG NDNWDAFQNL LLKDNDSEPE ELLRISSTAL NMASEVVRKR 0501: EPPSDDSFLV AIGNEDWGRE TSIEKFNAGE NVRIIRKGNN YDEEMLNPGR SDESRSYSQA EMSVHDGKLR TRNEAEEDWF IRNQAGPETD PSLVKTFVGD 0601: HFHLNKSSER DVLTDDSFMI HSRVENQVED SRLRTEIMDL DVYGTTQQEN SAPENTPHEP DDLYMVLGRE QDVKPTLLPW TPEIDFETNT LAQRTSRIDL 0701: ITATKASAGE QTLDGKEKKS RGISKGKDAK SRASSRPDPA SKAKRPAWGS RAAVSKSKSE MEEERKKRME ELLIQRQKRI AEKSSGGSVS SSLASKKTPT 0801: VTKSVKSSIK NEKTPEAAQS KAKPVLRSST IERLAVARTA PKEPQQKPVI KRTSKPSGYK TEKAQEKKSS KIGQSDAKSV ELSRDPSLEI KETVVEDSHS 0901: YLSEKQVDAL PAVASVDDFK DIKELHSLPS EETARVKNRP NEIIAEKVQD QTKIDDQETV KNTSVSEDKQ ITTKHYSEDV GEVQASQEKP VSPKKSVTFS 1001: ETNMEEKYYF SPAVSEIDIS TPPATEADHS RKKWNSEETS PKATAKVFRK LLMFGRKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)