AT4G27190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.557 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NB-ARC domain-containing disease resistance protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT4G27220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:13620977..13623934 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 112953.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.69 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 985 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MECCAPVIGE ILRLMYESTF SRVANAIKFK SNVKALNESL ERLTELKGNM SEDHETLLTK DKPLRLKLMR WQREAEEVIS KARLKLEERV SCGMSLRPRM 101: SRKLVKILDE VKMLEKDGIE FVDMLSVEST PERVEHVPGV SVVHQTMASN MLAKIRDGLT SEKAQKIGVW GMGGVGKTTL VRTLNNKLRE EGATQPFGLV 201: IFVIVSKEFD PREVQKQIAE RLDIDTQMEE SEEKLARRIY VGLMKERKFL LILDDVWKPI DLDLLGIPRT EENKGSKVIL TSRFLEVCRS MKTDLDVRVD 301: CLLEEDAWEL FCKNAGDVVR SDHVRKIAKA VSQECGGLPL AIITVGTAMR GKKNVKLWNH VLSKLSKSVP WIKSIEEKIF QPLKLSYDFL EDKAKFCFLL 401: CALFPEDYSI EVTEVVRYWM AEGFMEELGS QEDSMNEGIT TVESLKDYCL LEDGDRRDTV KMHDVVRDFA IWIMSSSQDD SHSLVMSGTG LQDIRQDKLA 501: PSLRRVSLMN NKLESLPDLV EEFCVKTSVL LLQGNFLLKE VPIGFLQAFP TLRILNLSGT RIKSFPSCSL LRLFSLHSLF LRDCFKLVKL PSLETLAKLE 601: LLDLCGTHIL EFPRGLEELK RFRHLDLSRT LHLESIPARV VSRLSSLETL DMTSSHYRWS VQGETQKGQA TVEEIGCLQR LQVLSIRLHS SPFLLNKRNT 701: WIKRLKKFQL VVGSRYILRT RHDKRRLTIS HLNVSQVSIG WLLAYTTSLA LNHCQGIEAM MKKLVSDNKG FKNLKSLTIE NVIINTNSWV EMVSTNTSKQ 801: SSDILDLLPN LEELHLRRVD LETFSELQTH LGLKLETLKI IEITMCRKLR TLLDKRNFLT IPNLEEIEIS YCDSLQNLHE ALLYHQPFVP NLRVLKLRNL 901: PNLVSICNWG EVWECLEQVE VIHCNQLNCL PISSTCGRIK KIKGELSWWE RLEWDDPSAL TTVQPFFNPV REVPLLIADA TTQML |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)