AT4G26630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DEK domain-containing chromatin associated protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DEK domain-containing chromatin associated protein; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: DEK domain-containing chromatin associated protein (TAIR:AT5G55660.1); Has 293195 Blast hits to 121176 proteins in 3836 species: Archae - 1379; Bacteria - 45347; Metazoa - 110567; Fungi - 36004; Plants - 15140; Viruses - 1802; Other Eukaryotes - 82956 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:13430873..13434877 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85253.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.72 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.53 | ||||||||||||||||||||||||||||||||||||||||
| Length | 763 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEDTKATIE PTANKTTSLE KPSEAMAGKE NAGGKETQEL AKDEDMAEPD NMEIDAQIKK DDEKAETEDK ESEVKKNEDN AETQKMEEKV EVTKDEGQAE 101: ATNMDEDADG KKEQTDDGVS VEDTVMKENV ESKDNNYAKD DEKETKETDI TEADHKKAGK EDIQHEADKA NGTKDGNTGD IKEEGTLVDE DKGTDMDEKV 201: ENGDENKQVE NVEGKEKEDK EENKTKEVEA AKAEVDESKV EDEKEGSEDE NDNEKVESKD AKEDEKEETN DDKEDEKEES KGSKKRGKGT SSGGKVREKN 301: KTEEVKKDAE PRTPFSDRPV RERKSVERLV ALIDKDSSKE FRVEKGRGAY LKDIPNVANK VMRKRSDETL KLLHPILFGG RRGKAAQIKT NILGFSGFVW 401: HGDEKKAKEK VKEKLEKCTK EKLWEFCDVL DIHITKATTK KEDIITKLFE FLEKPHVTGD VTGDTTVSEK EKSSKGAKRK RTPKKTSPTA GSSSSKRSAK 501: SQKKSEEATK VVKKSLAHSD DESEEEKEEE EKQEEEKAEE KEEKKEEENE NGIPDKSEDE APQPSESEEK DESEEHSEEE TTKKKRGSRL SAGKKESAGR 601: ARNKKAVVAA KSSPPEKITQ KRSSAKRKKT DDDSDTSPKA SSKRKKSENP IKASPAPSKS ASKEKPVKRA GKGKDKPSDK VLKNAIVEIL KRVDFSTATF 701: TDILKELAKE FTEDLTPRKS SIKMIIQEEL TKLADEEEEE EKKEEDSEKE EAGGSGGGEE VKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)