AT4G26170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.864 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: effector of transcription2 (TAIR:AT5G56780.1); Has 75 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13256930..13259382 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57005.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.34 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||||||
| Length | 506 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVVLQIHSS INVKVFASRL RKHFFFTRRK ITRIATCLSS SRCPLYPSHW NLCRWNNKQG GTEIGLLIGG LIVFRQTLKS DQETKREQKK RDWILVTAFP 101: SPSCSPCSRE TTTFELIMTP FFQSGRVSPD LCFCVNPFQK LQNSQDFCGL LLNFSRFRSK AKGANEKENF REGKDLVGRN RVQGAFQGLY ELSHDHGRKD 201: DVLVANLGQP ESIRSRLRSY SRSFAHHDLL KQGLSQTILP TTQNKSDNQT EEKKSDSEEE REVSSDAAEK ESNSLPSILR LSRSRPQPVS EKHDDIVDES 301: DSASACGVLL EDGTTCTTTP VKGRKRCTEH KGKRLSRVSP GIHIPCEVPT VRECEETENI CGVILPDMIR CRSKPVSRRK RCEDHKGMRV NAFFFLLNPT 401: ERDKAVNEDK SKPETSTGMN QEGSGLLCEA TTKNGLPCTR SAPEGSKRCW QHKDKTLNHG SSENVQSATA SQVICGFKLY NGSVCEKSPV KGRKRCEEHK 501: GMRITS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)