AT4G26140.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : beta-galactosidase 12 | ||||||||||||||||
| Curator Summary (TAIR10) |
putative beta-galactosidase | ||||||||||||||||
| Computational Description (TAIR10) |
beta-galactosidase 12 (BGAL12); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 2 (TAIR:AT3G52840.1); Has 2056 Blast hits to 2037 proteins in 472 species: Archae - 15; Bacteria - 846; Metazoa - 355; Fungi - 209; Plants - 564; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:13243674..13247823 | ||||||||||||||||
| Molecular Weight (calculated) | 71360.80 Da | ||||||||||||||||
| IEP (calculated) | 6.91 | ||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||
| Length | 636 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGLNFREKAW ILLGILCCSS LICSVKAIVT YDRKAVIING QRRILLSGSI HYPRSTPEMW PDLIQKAKDG GLDVIQTYVF WNGHEPSPGQ YYFEDRYDLV 101: KFIKVVQQAG LYVHLRIGPY VCAEWNFGGF PVWLKYVPGM VFRTDNEPFK AAMQKFTEKI VRMMKEEKLF ETQGGPIILS QIENEYGPIE WEIGAPGKAY 201: TKWVAEMAQG LSTGVPWIMC KQDDAPNSII NTCNGFYCEN FKPNSDNKPK MWTENWTGWF TEFGGAVPYR PAEDIALSVA RFIQNGGSFI NYYMYHGGTN 301: FDRTAGEFIA TSYDYDAPLD EYGLPREPKY SHLKRLHKVI KLCEPALVSA DPTVTSLGDK QEAHVFKSKS SCAAFLSNYN TSSAARVLFG GSTYDLPPWS 401: VSILPDCKTE YYNTAKVRTS SIHMKMVPTN TPFSWGSYNE EIPSANDNGT FSQDGLVEQI SITRDKTDYF WYLTDITISP DEKFLTGEDP LLTIGSAGHA 501: LHVFVNGQLA GTAYGSLEKP KLTFSQKIKL HAGVNKLALL STAAGLPNVG VHYETWNTGV LGPVTLNGVN SGTWDMTKWK WSYKIGTKGE ALSVHTLAGS 601: STVEWKEGSL VAKKQPLTWY KVRETEESMN HDHQQS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)