AT4G25860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : OSBP(oxysterol binding protein)-related protein 4A | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
OSBP(oxysterol binding protein)-related protein 4A (ORP4A); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.1); Has 2166 Blast hits to 2165 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1078; Fungi - 636; Plants - 233; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13147357..13149527 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44074.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.23 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||
| Length | 386 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEEEKMRRQ LVLAKPFSLE DEKDSELTAS SVIRKILSLI KTVRPGSDLT NFQLPPQLIL PRSRLQCYGE MIYSFGGQDL LGECSRRNIP IERLKSVVTW 101: NISTLRPVVV GMSPYNPILG ETHHVSNGYI NVLTEQVMHH PPVSALHATH EQENIDVTWC QYFTPKFRGA YVDVEVNGKR IMKLLHHKET YEMDQPRLIM 201: KFLPAPGAHW AGKVKIKCPE TDLEAELHLI SDSFIERFRG NNNRSIKGKI FESSSGNQLY NIFGHWDRTV MAKNLKTGGL EVIYNANENI TGLKPPTVKN 301: LQEVMESEST IVWSEVSEGI LKKDWERARE AKILVEEKQR EALKQREASG ESWVPKHFSV VKDGKDWHCS PLQPTVPRAP LVITEK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)