AT4G25800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.581 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calmodulin-binding protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calmodulin-binding protein; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT5G57580.1); Has 340 Blast hits to 325 proteins in 25 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 333; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13125224..13127765 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67594.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.13 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||
| Length | 601 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRNFERNDD DKPERKRPAL ASVIVEALKV DSLQKLCSSL EPILRRVVSE EVERALAKLV PTRLTTSSVF SPKRIGGPDG RNLQLHFKSR LSLPLFTGGR 101: VEGEQGATIH VVLIDANTGR PVTVGPEASL KLEVVVLGGD FNNEDDEDWT QEEFESHVVK EREGKRPLLT GDLFVVLKEG VGTLGEIVFT DNSSWIRSRK 201: FRLGLRVPSG YCDGIRIREA KTEAFSVKDH RGELYKKHYP PALNDEVWRL EKIGKDGAFH KRLTAAGIVT VEGFLRQLVR DSTKLRAILG SGMSNKMWDL 301: LVEHAKTCVL SGKLYIYYTE DSRSVGVVFN NIYELSGLIT EDQYLSADSL SESQKVYVDG LVKKAYENWN QVVEYEGESL LNLNQPERLD ISQTDPVTAL 401: ASYSTVPLSQ FPEFAIEGYN QTLTTALPHN PQAQFDFVPQ QDQFIGIQQP QTQTNIENEN VTRLVLGPPQ SSTGGYQDIK SSADQENLNP FEDWTNLSEN 501: DFFSEEEIRQ TSHDLLANED MQQLLFSMGG GKGEDGFTFP SFMQNTPMMQ GYDEEGRGRS GKAVVGWLKV KAAMRWGFFI RRKAAERRAQ IVELHDNNDG 601: K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)