AT4G25660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.793 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PPPDE putative thiol peptidase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT4G25680.1); Has 753 Blast hits to 753 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 205; Fungi - 55; Plants - 348; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13083677..13084989 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28157.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.12 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||
| Length | 255 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCEQG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQILRELS 101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN 201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)