suba logo
AT4G25315.2
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Expressed protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3128 (InterPro:IPR021475).
Protein Annotations
EMBL:CP002687EnsemblPlants:AT4G25315EnsemblPlants:AT4G25315.2entrez:2745726
ExpressionAtlas:F4JSK0GeneID:2745726Gramene:AT4G25315.2hmmpanther:PTHR28052
hmmpanther:PTHR28052:SF1InterPro:IPR021475KEGG:ath:AT4G25315ncoils:Coil
Pfam:PF11326PRIDE:F4JSK0Proteomes:UP000006548RefSeq:NP_001190835.1
TAIR:AT4G25315UniGene:At.47966UniProt:F4JSK0
Coordinates (TAIR10) chr4:-:12951659..12952834
Molecular Weight (calculated) 12774.90 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.81
Length 108 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSENEDSSS VRRRVSCTKC FDALWFCYSP FYQMQQYYRV GKLDDCTKKF SDLFDCLSLK TKRASEAERI LEEQEKAAAE KHIWIMRTQE EAVSHWNETF
101: GHLEDPNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)