AT4G25180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA polymerase III RPC4 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA polymerase III RPC4; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription from RNA polymerase III promoter; LOCATED IN: DNA-directed RNA polymerase III complex; CONTAINS InterPro DOMAIN/s: RNA polymerase III Rpc4 (InterPro:IPR007811); BEST Arabidopsis thaliana protein match is: RNA polymerase III RPC4 (TAIR:AT5G09380.1); Has 141 Blast hits to 141 proteins in 63 species: Archae - 0; Bacteria - 2; Metazoa - 43; Fungi - 19; Plants - 57; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12911746..12913907 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34252.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.17 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||
| Length | 311 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSGEQKSKR RFQPNPPRPS RRLPIAPTSN TEAEEDEENI KASRQFDRRI VGRRPKTETK ASSPEVAFQP SLSPLAIRSF GVPKEDDKPN SDVNPSSPAS 101: ILPAVSSVTA AQEDGEEVHN FVTRTGDDYV EPWDYRNSYY PTVLPLRKPN SGDIELLDQE EFGEVAKNRD YDENTINSAE ELGLTSVQHS KKQMFIFKIP 201: DCLPVVKQTT GATTKRSVRE YSSGISNPFE GLPEGFMGKM LVYKSGAVKL KVGDALFDVS PGPGTKIPND VVAIDIKGRN CSRIGSSAKF VTVTPDVESL 301: LNPASDMETQ K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)