AT4G24500.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; Has 273 Blast hits to 270 proteins in 79 species: Archae - 0; Bacteria - 25; Metazoa - 136; Fungi - 37; Plants - 63; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12658732..12660211 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 31608.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.48 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.11 | ||||||||||||||||||||||||
| Length | 290 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDSEKRKQM LKAMRMEAAA QNDDDATTGT ETSMSTGHLS NPLAETSNHQ QDSFETQSHQ GSSPVPPQFP PSVPPGSLCS EYQAQTNHGG FHAAHYEPRG 101: MAHLSPSHRG PPAGWNNNFR PPPVNHSGPP QWVPRPFPFS QEMPNMGNNR FGGRGSYNNT PPQFSNYGRQ NANWGGNTYP NSGRGRSRGR GMNTSFGRDG 201: GRRPMEPGAE RFYSNSMAED PWKHLKPVLW KNCSDASSSS STGQAWLPKS IAPKKSVTSE ATHKTSSNQQ SLAEYLAASL DGATCDESSN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)