AT4G24430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rhamnogalacturonate lyase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1); Has 287 Blast hits to 273 proteins in 60 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 83; Plants - 162; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12630018..12632975 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73612.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.82 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 646 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNQDSVQLD VQESHVVMGN GKVKVTISKP DGFVTGISYQ GVDNLLETHN EDFNRGYWDL VWSDEGTPGT TGKSERIKGT SFEVVVENEE LVEISFSRKW 101: DSSLQDSIAP INVDKRFIMR KDVTGFYSYA IFEHLAEWPA FNLPQTRIVY KLRKDKFKYM AIADNRQRKM PLPEDRLGKR GRPLAYPEAV LLVHPVEDEF 201: KGEVDDKYEY SSENKDLKVH GWISHNLDLG CWQIIPSNEF RSGGLSKQNL TSHVGPISLA MFLSAHYAGE DMVMKVKAGD SWKKVFGPVF TYLNCLPDKT 301: SDPLSLWQDA KNQMLTEVQS WPYDFPASED FPVSDKRGCI SGRLLVCDKF LSDDFLPANG AFVGLAPPGE VGSWQLESKG YQFWTEADSD GYFAINDIRE 401: GEYNLNGYVT GWIGDYQYEQ LINITAGCDI DVGNIVYEPP RDGPTVWEIG IPDRSAAEFF VPDPNPKYIN KLYIGHPDRF RQYGLWERYT ELYPKEDLVF 501: TIGVSDYKKD WFFAHVTRKM GDDTYQKTTW QIKFKLENVQ KSCTYKIRIA LATANVAELQ VRMNDDDTEK TTPIFTTGVI GHDNAIARHG IHGIYRLYNV 601: DVPSEKLVEG DNTLFLTQTM TTTGAFNGLM YDYIRLEGPP LDSYSH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)