AT4G24220.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||
| Curator Summary (TAIR10) |
encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding. | ||||||||
| Computational Description (TAIR10) |
VEIN PATTERNING 1 (VEP1); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: xylem and phloem pattern formation, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G58750.1); Has 711 Blast hits to 707 proteins in 202 species: Archae - 0; Bacteria - 240; Metazoa - 0; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12565219..12566474 | ||||||||
| Molecular Weight (calculated) | 44104.40 Da | ||||||||
| IEP (calculated) | 4.78 | ||||||||
| GRAVY (calculated) | -0.32 | ||||||||
| Length | 387 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MSWWWAGAIG AAKKLDEDEP SQSFESVALI IGVTGIVGNS LAEILPLSDT PGGPWKVYGV ARRPRPTWNA DHPIDYIQCD VSDAEDTRSK LSPLTDVTHV 101: FYVTWTNRES ESENCEANGS MLRNVLQAII PYAPNLRHVC LQTGTKHYLG PFTNVDGPRH DPPFTEDMPR LQIQNFYYTQ EDILFEEIKK IETVTWSIHR 201: PNMIFGFSPY SLMNIVGTLC VYAAICKHEG SPLLFPGSKK AWEGFMTASD ADLIAEQQIW AAVDPYAKNE AFNCNNADIF KWKHLWKILA EQFGIEEYGF 301: EEGKNLGLVE MMKGKERVWE EMVKENQLQE KKLEEVGVWW FADVILGVEG MIDSMNKSKE YGFLGFRNSN NSFISWIDKY KAFKIVP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)