AT4G24180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : THAUMATIN-LIKE PROTEIN 1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Root-specific expression activated in response to rhizobacteria and ACC. Role in induced systemic resistance. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
THAUMATIN-LIKE PROTEIN 1 (TLP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to other organism, induced systemic resistance, response to bacterium; LOCATED IN: endomembrane system; EXPRESSED IN: root vascular system; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G38660.1); Has 1607 Blast hits to 1581 proteins in 180 species: Archae - 0; Bacteria - 47; Metazoa - 54; Fungi - 78; Plants - 1413; Viruses - 3; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12550356..12551221 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 27452.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.56 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||||||||||||||
| Length | 260 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIITVLHSHV SFYFIILSFL FFHALHLVGS DGATITIVNR CSFTVWPGIL SNSGSGDIGT TGFELVPGGS RSFQAPASWS GRFWARTGCN FNSDTGQGTC 101: LTGDCGSNQV ECNGAGAKPP ATLAEFTIGS GPADPARKQD FYDVSLVDGY NVPMLVEASG GSEGTCLTTG CVTDLNQKCP TELRFGSGSA CKSACEAFGS 201: PEYCCSGAYA SPTECKPSMY SEIFKSACPR SYSYAFDDAT STFTCTDADY TITFCPSLPR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)