AT4G23620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain; FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L25, N-terminal (InterPro:IPR020055), Ribosomal protein L25 (InterPro:IPR001021), Ribosomal protein L25, beta domain (InterPro:IPR020057), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035); BEST Arabidopsis thaliana protein match is: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (TAIR:AT5G66860.1); Has 3887 Blast hits to 3887 proteins in 1083 species: Archae - 0; Bacteria - 2293; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1522 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12315016..12316659 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 29019.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.55 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 264 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLRRAKTLP KTLQNLRLFS PAANAALSLD HIQETQLTYL PGFPRPDPKH AETILAVPRS VSGKSISAKE RKAGRVPSII FEQEDGQHGG NKRLISVQTN 101: QIRKLVNHLG YSFFLSRLFD VEVRAEIGSD EVIEKVRALP RAIHLHSGTD APLNVTFIRA PPGALLKVDI PLVFIGDDVS PGLKKGASLN TIKRTVKFLC 201: PAEIIPPYIE VDLSQLDIGQ KLVMGDLKVH PALKLIKSKD EPIVKVAGGR VTDTQKKSSD TQKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)