AT4G23570.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.979 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phosphatase-related | ||||||||||||||||
| Curator Summary (TAIR10) |
Closely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance. | ||||||||||||||||
| Computational Description (TAIR10) |
SGT1A; CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), Tetratricopeptide-like helical (InterPro:IPR011990), SGS (InterPro:IPR007699), Tetratricopeptide repeat-containing (InterPro:IPR013026), HSP20-like chaperone (InterPro:IPR008978), Tetratricopeptide repeat (InterPro:IPR019734), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: phosphatase-related (TAIR:AT4G11260.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12300015..12302493 | ||||||||||||||||
| Molecular Weight (calculated) | 39297.60 Da | ||||||||||||||||
| IEP (calculated) | 4.65 | ||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||
| Length | 351 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKELADKAK EAFVDDDFDV AVDLYSKAID LDPNCAEFFA DRAQAYIKLE SFTAEAVADA NKAIELDPSL TKAYLRKGTA CMKLEEYRTA KTALEKGASI 101: TPSESKFKKL IDECNFLITE EEKDLVQPVP STLPSSVTAP PVSELDVTPT AKYRHEYYQK PEEVVVTVFA KGIPKQNVNI DFGEQILSVV IEVPGEDAYY 201: LQPRLFGKII PDKCKYEVLS TKIEICLAKA DIITWASLEH GKGPAVLPKP NVSSEVSQRP AYPSSKKVKD WDKLEAEVKK QEKDEKLEGD AALNKFFREI 301: YQNADEDMRR AMSKSFVESN GTVLSTNWQE VGTKTIESTP PDGMELKKWE I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)