AT4G23380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of Unknown Function (DUF239) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G23350.1); Has 707 Blast hits to 664 proteins in 27 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 684; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12214667..12216333 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 44295.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.95 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||
| Length | 400 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSSNKNLVL RILLTISLVL VSEAAHESRG IPSEEEKKEM ERQLKAINKP AIKSFKTEQV EIFDCIDIHK QLAFDHHLLR NHSVKLKPTS VPKWPITYDN 101: KGQKVGPMQL QLKGISCPHG TVIVKRTTIQ DLINSQHLKS IGFNIPRHVL SQGSNIDLSG HHFATADYDY DNVAGVTGNI NLWDPQVSHD QVSLATMAIA 201: GGPKIEQLAS ISVGWMVNPL LYQDHIHLYT YWTADGYNKT GCYDIRCPGF VQVSKRIPLG VLLQPISVYN GTQKEMDLSL HQVVTSRVSG VNVGYWPQSL 301: FIASGLVKGA DLASWGGQVY SPKTEKSPIM GSGHFPKEGF GKAAFVNNIH IMNGKGEALI PQIYTIETHE SSPNCYKAKF VHDEDEPWIR AVYFGGPGGC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)