AT4G23370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23360.1); Has 2365 Blast hits to 710 proteins in 27 species: Archae - 0; Bacteria - 35; Metazoa - 0; Fungi - 30; Plants - 2300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12206362..12213435 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 116737.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.24 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||
| Length | 1038 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MISFDKLLLL TFLAVSLILV AESRGQILLE DDENELDRLL NYINKPPIKS FQTENGDILD CIDIHKQLAF DHPQLKNHSI QLRPTTIPKW NITNNNDSRP 0101: VPLRQDGISC PLGTVIVKRT TPNDLIQDQR LKAMGLRLAQ YKYSHYGARG NLNLWEPEVS PTQFSLASML ISSGLNEQFQ GIRAGWIVYQ WLNRNHTRLY 0201: TYWTTDGFKK TGCYNTLCPG FVQSSEREES KHGSGHFPQE GFKKAAYVSG IELIEDIKLE GSMGPPLHSL KTVSSTPNCY KAIKKPGMGE LWANAIFFGG 0301: PGGSIALIIV TESYRTKPLE EEENTLESLL NYINKSAIKS FRTKHGDTLD CIDIHKQLAF NHPLLINHSI QPTTIPKWTI NNNNNSEKGG SFPFRRDGIS 0401: CPLGTVIVKR TTLEDLIQAQ SLKSMGFKSS RYVSSKSKNI DLSGYHFAVA QYKKFHYGAK GNLNIWEPEV SPNQFSLASI TISAGSNEQF QGIRAGWIVY 0501: QWLNKNHSRL YTYWTADGFN KTGCYNTLCP GFVQVSTDIP LGYLLQPVST YGGKQYEVGI NMYKDHITGN WWLVAFNNNY VGYWPKSLFT DVGLGHGGSL 0601: ASWGGEVYSP VKEKSPSMGS GHFPQQKSYT KVAYMNDFVV YNDLGSEVTL ILSAQATKER RPIPSKAERK EMERQLKAIN KPAIKSLKTE YGDIFDCIDI 0701: HKQRAFDHHL LKNHSIQLKP TSVPEWINRN ISGRSFGLLQ EGISCPDGTV IVKRTTMQDL MHAQRLKSMG FDGPRPFLTE TNNTNFNRKF YVAKANYGPD 0801: LFAGVRGNIN IWSPKILQDQ VSVAYIAVGG GAKENFASIS VGWKVNPSLY HGDHVRLYAS WTVSFELYHN TGCNDMSCPG FVQVSKTIAL GAIIQPISIY 0901: KGPQYELRLT LYQNQIKGDW WFACNDEDVG YWPASLFKSW RESNAASYAS WGGQVYSPVT EKSPPMGSGH WPSEGFHKSA YVSNLQIINV NGRVFNPQTG 1001: TVKLHETMRS CYKARFVHDA KKPWLKSFYY GGPGGCIV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)