AT4G23280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cysteine-rich RLK (RECEPTOR-like protein kinase) 20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a cysteine-rich receptor-like protein kinase. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (CRK20); FUNCTIONS IN: kinase activity; INVOLVED IN: defense response to bacterium, defense response, programmed cell death, response to salicylic acid stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (TAIR:AT4G23270.1); Has 119459 Blast hits to 118018 proteins in 4463 species: Archae - 96; Bacteria - 13614; Metazoa - 44023; Fungi - 10123; Plants - 33901; Viruses - 397; Other Eukaryotes - 17305 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12174740..12177471 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73038.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.93 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 656 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSLICFIFL FLFSFITSFT ASAQNPFYLY HNCSITTTYS SNSTYSTNLK TLLSSLSSRN ASYSTGFQNA TAGQAPDMVT GLFLCRGNVS PEVCRSCIAL 101: SVNESLSRCP NEREAVFYYE QCMLRYSNRN ILSTLNTDGG VFMQNARNPI SVKQDRFRDL VLNPMNLAAI EAARSIKRFA VTKFDLNALQ SLYGMVQCTP 201: DLTEQDCLDC LQQSINQVTY DKIGGRTFLP SCTSRYDNYE FYNEFNVGKG GNSSVIVIAV VVPITVLFLL FVAFFSVRRA KRKKTIGAIP LFKVKRKETE 301: VTEPPAETTD GDDITTAGSL QFDFKAIVAA TDIFLPINKL GQGGFGEVYK GTFPSGVQVA VKRLSKNSGQ GEKEFENEVV VVAKLQHRNL VKLLGYCLEG 401: EEKILVYEFV PNKSLDYFLF DPTMQGQLDW SRRYKIIGGI ARGILYLHQD SRLTIIHRDL KAGNILLDAD MNPKVADFGM ARIFGMDQTE ANTRRVVGTY 501: GYMAPEYAMY GKFSMKSDVY SFGVLVLEIV SGMKNSSLDQ MDGSISNLVT YTWRLWSNGS PSELVDPSFG DNYQTSEITR CIHIALLCVQ EDANDRPTMS 601: AIVQMLTTSS IALAVPRPPG FFLRSKQEQA ERACPSMDTS DLFSIDEASI TSVAPR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)