AT4G22990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT4G11810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12048240..12050984 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78453.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.73 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.22 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 699 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAFGKKLKE RSIQEWQGYY INYKLMKKKV KQYSRQLEGG NLERRHVLKD FSRMLDNQIE KIALFMLEQQ GLLASRLQTL RGSHDALQEQ PDISHMSYLK 101: EEYRAVGQDL LKLLFFVEMN AIGIRKILKK FDKRFGYRFT NYYVKTRANH PYSELQQVFR HVGLGAVVGA VSRNLHELQN NQGSYLSIYD QPVLPLQDPV 201: VDSIRAAVDR LTRSTNFLHF MAQHALIMQE ELPSPQDEEG EEEDGRYHFM SLLLNLVNTF LYMVNTYIIV PTADDYSMSL GAAATVCGVV IGAMAVAQLF 301: SSVYFSAWSN RSYFKPLIFS SIVLFIGNLL YALAFDFNSI AVLLIGRLFC GLGSARAVNR RYISDCVPLK IRMQASAGFV SASALGMACG PALAGLLQIR 401: FKIYKLTFNQ DTLPGWVMAV AWLIYLVWLA ISFREPAREP EEIPKTSEES NHSAVQDVNL EKGMKQPLLL TSEEIEEQGE DECDGSEEAS EDSRTPANSI 501: LAAYRLLTPS VKVQLLIYFM LKYAMEILLS ESSVITTYYF GWSTSSVAIF LFCLGLTVLP VNLVVGSYIS NMFEDRQILL VSEIMVCVGI LLSFHVVVPY 601: TVPQYVCSGL IMFVSAEVLE GVNLSLLSRV MSSRLSRGTY NGGLLSTEAG TIARVIADAT ITVAGFFGRN MLLNVTLLPS LVICVLSIVA TCFTYNSLY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)