AT4G22890.5
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PGR5-LIKE A | ||||||||
| Curator Summary (TAIR10) |
Encodes PGRL1A, a transmembrane protein present in thylakoids. PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I). | ||||||||
| Computational Description (TAIR10) |
PGR5-LIKE A; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 112 Blast hits to 112 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12007157..12009175 | ||||||||
| Molecular Weight (calculated) | 35568.80 Da | ||||||||
| IEP (calculated) | 4.92 | ||||||||
| GRAVY (calculated) | -0.02 | ||||||||
| Length | 322 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSVGGD NVDSNVLPYC SINKAEKKTI GEMEQEFLQA 101: LQSFYYDGKA IMSNEEFDNL KEELMWEGSS VVMLSSDEQR FLEASMAYVS GNPILNDEEY DKLKLKLKID GSDIVSEGPR CSLRSKKVYS DLAVDYFKML 201: LLNVPATVVA LGLFFFLDDI TGFEITYIME LPEPYSFIFT WFAAVPVIVY LALSITKLII KDFLILKGPC PNCGTENTSF FGTILSISSG GKTNTVKCTN 301: CGTAMVYDSG SRLITLPEGS QA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)