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AT4G22165.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.871
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box family protein with a domain of unknown function (DUF295)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JJ19eggNOG:ENOG4111E1YEMBL:AL021712EMBL:AL161556
EMBL:CP002687EnsemblPlants:AT4G22165EnsemblPlants:AT4G22165.1entrez:828306
GeneID:828306Gramene:AT4G22165.1hmmpanther:PTHR20995hmmpanther:PTHR20995:SF21
HOGENOM:HOG000065924InParanoid:P0CG94InterPro:IPR001810InterPro:IPR005174
KEGG:ath:AT4G22165OMA:LPEISHCPaxDb:P0CG94Pfam:P0CG94
Pfam:PF00646Pfam:PF03478PhylomeDB:P0CG94PIR:E85253
PRIDE:P0CG94PRO:PR:P0CG94ProteinModelPortal:P0CG94Proteomes:UP000006548
RefSeq:NP_567647.1SMART:SM00256SMR:P0CG94TAIR:AT4G22165
UniGene:At.54467UniProt:P0CG94
Coordinates (TAIR10) chr4:+:11734328..11735419
Molecular Weight (calculated) 42377.90 Da
IEP (calculated) 8.50
GRAVY (calculated) -0.27
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKNHNPNTW SELPLDLLNL VFKRLSLVNF QRAKSVCSTR YSVSRQCVPE RQIALLILFP KEDNTDNSTC KLFNPDEKDK LYKMQDLGVE FAKSVCRATY
101: GSWLLMQDSK YHLYILNIFT RKRINLPPVE SQLGMVKIER TIYDWFHFSH GHYSFSLSSP VFWIDEESKD YIVMWGLGVY CVVYAKKGDT SWNQIPQTSY
201: FYDMVYKDHK LYFLSSTGTF QILDFSEEMD NKTSKVVCLL DRKLVVTVTG KALKVAKMWR PTYRTWSFRV FKISSSGYEK LDSLGDEALL LDLGITVLAS
301: DVEGFKRNSI YFSCRPSGGY ETNASDLFLF NLETQKMELL HKFDCSSLQL YRSRWFLPSL THT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)