AT4G22060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.494 golgi 0.333 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box family protein with a domain of unknown function (DUF295) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22180.1); Has 455 Blast hits to 441 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 453; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11687620..11688819 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47475.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.98 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||
| Length | 399 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPPSLMSDG SSWSKLPLDL LIMVFERLGF VDFQRTKSVC LAWLYASRMS APNKQIPWLI MFPEKGKDFC LLFNSEEKEK IYRIQNLGVE FANSHCLAIY 101: GSWLFMRDPR YKLYIMNLFT RERINLPSVE SQFGRIKIEQ INDDLFYRKV DDEYDYHPKR HMIDISDHIL WIDDKTKDYV VMWSFECGYT YMVYCRTGDN 201: IWNYRSLDIS TVNIVYKDHK MYLYSYTRDV KVLDFCEDIP RQIFETQVNY DILMEKGFRS DVDDVLNDKK EHLVVTLNGD VLRVKSKIWD NSDVWSFCIY 301: KLNSSNTYWE KLTSLGDEAI LLDLGITVLA NTIEGINRNS IYFSGYHRPH YFRFDHVWSE KDICVFNLDT QEVERPHQSI CSSIQISGAR WFVPNFKHI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)