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AT4G21903.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.604
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G21910.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AL021890EMBL:CP002687
EnsemblPlants:AT4G21903EnsemblPlants:AT4G21903.1entrez:6241480ExpressionAtlas:F4JKB9
GeneID:6241480Genevisible:F4JKB9GO:GO:0015238GO:GO:0015297
GO:GO:0016021hmmpanther:PTHR11206hmmpanther:PTHR11206:SF140InterPro:IPR002528
KEGG:ath:AT4G21903KO:K03327PaxDb:F4JKB9Pfam:PF01554
PRIDE:F4JKB9ProteinModelPortal:F4JKB9Proteomes:UP000006548RefSeq:NP_001119025.1
SMR:F4JKB9STRING:3702.AT4G21903.2TAIR:AT4G21903TIGRfam:TIGR00797
TIGRFAMs:TIGR00797TMHMM:TMhelixUniGene:At.74352UniProt:F4JKB9
Coordinates (TAIR10) chr4:-:11621169..11623738
Molecular Weight (calculated) 55115.00 Da
IEP (calculated) 7.94
GRAVY (calculated) 0.64
Length 504 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGSNETVER RIELRRPLVD TEKKLPLEVG LESVLTESSL PYRRRVYLGM CIELKLLLRL ALPAILVYLI NGGMGISARI FAGHLGSTQL AAASIGNSSF
101: SLVYALMLGM GSAVETLCGQ AYGAHRYEML GIYLQRATIV LALVGFPMTI LYTFSYPILL LLGEPKTVSY MGSLYIAGLI PQIFAYAVYF TAQKFLQAQS
201: VVAPSAYISA AALVLQISLT WITVYAMGQG LMGIAYVLTI SWWFIVGAQT FYVITSVRFK DTWTGFSWKS LHGLWSFFKL SAGSAVMICL ELWYTQILVL
301: LAGLLKDPAL SLDSLSICMS ISALSFMVSV GFNAAVSVRT SNELGAGNPK SALFSTWTAT FVSFVISVVE ALVVIASRDN VSYIFTSDAD VAKAVSDLCP
401: FLAVTIILNG IQPVLSGVAV GCGWQTYVAY VNIGCYYIVG IPIGCILGFT FNFQAKGIWT GMIGGTLMQT LILLYVTYQA DWDKEVEKAR KRLDMWDDKE
501: PLQN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)