AT4G21660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : proline-rich spliceosome-associated (PSP) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
proline-rich spliceosome-associated (PSP) family protein; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Protein of unknown function DUF382 (InterPro:IPR007180); BEST Arabidopsis thaliana protein match is: pliceosome associated protein-related (TAIR:AT1G11520.1); Has 10486 Blast hits to 6076 proteins in 488 species: Archae - 22; Bacteria - 303; Metazoa - 4991; Fungi - 920; Plants - 455; Viruses - 239; Other Eukaryotes - 3556 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11506259..11509772 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66836.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.85 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.13 | ||||||||||||||||||||||||||||||||
| Length | 584 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTADSTVALV HSVVSNGDVS NGNTSASSKK SREIDRRRRR RKQKKNNKAS QADVDASDVS AASESKENTD PQPQVCEQIV IEYVPEQAEF EDGFNDEFKE 101: IFEKFNFREP LASEEDGTKD ESEEKEDVKK KVNSDSDSDD DEQDNQNKEK GISNKKKKLQ RRMKIAELKQ VSARPDVVEV WDATSADPKL LVFLKSYRNT 201: VPVPRHWSQK RKYLQGKRGI EKQPFHLPDF IAATGIEKIR QAYIEKEDGK KLKQKQRERM QPKMGKMDID YQVLHDAFFK YQTKPKLSAL GDLYFEGKEF 301: EVKLRETKPG FLSNDLKEAL GMPEGAPPPW LINMQRYGPP PSYPHLKIPG LNAPIPIGAS FGFHAGGWGK PPVDEYGRPL YGDVFGVQQQ DQPNYEEEPI 401: DKSKHWGDLE EEEEEEEEEE EEQEEEMDEE ELEDGTESVD TLSSTPTGIE TPDAIELRKD QRKEPDRALY QVLEEKGESV APGTLLGTSH TYVIKTGTQE 501: KTGAKRVDLL RGQKTDRVDV SLQPEELDAM ENVLPAKYEE AREEEKLRNK PVDLSDMVVE HVQQNSRKRK MHDKEGKKKK DFKF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)