AT4G21540.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : sphingosine kinase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
sphingosine kinase 1 (SPHK1); FUNCTIONS IN: diacylglycerol kinase activity, sphinganine kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, seed germination, response to abscisic acid stimulus; LOCATED IN: plant-type vacuole membrane, vacuole; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic domain (InterPro:IPR001206); BEST Arabidopsis thaliana protein match is: Diacylglycerol kinase family protein (TAIR:AT4G21534.1); Has 6888 Blast hits to 3984 proteins in 1156 species: Archae - 1; Bacteria - 4291; Metazoa - 1136; Fungi - 331; Plants - 472; Viruses - 0; Other Eukaryotes - 657 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:11459609..11462356 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 53701.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.78 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 485 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDRQPEREND ELPSPAIISD RVLVNGVVTP LTLTAEGELR STESGRRKST LAKEILSFVV EGNKVRVKTL VEKGGGICCR GSAGDYARND FVFEPLSDES 101: RKLWSDKFHQ HLVSLGRPKK LLVFVNPFGG KKTARKIFQE EVKPLFEDAN IQLEIQETKY QLHAKEIVRS MDVSKYDGIV CVSGDGILVE VVNGLLERED 201: WKTAIKLPIG MVPAGSGNGM IKSLLEPVGL PCSATSATIS IIRGRTRSLD VATISQGTTK FFSVLMLAWG LVADIDIESE KFRWMGSARF DIYGLQRIIC 301: LRQYHGRILF VPAPGFESYG QRASCSIDKE PSGSDKTLVY QGPDSKLENL DWREMKGPFV SVWLHNVPWG AENTLAAPDA KFSDGFLDLI VMKDCPKLAL 401: LSLMTKLSDG THVQSPYASY LKVKAFVLEP GARIDEPDKE GIIDSDGEVL ARGRKSYKCD QKALMSYDKL QISVDQGLAT LFSPE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)