AT4G21010.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Transcription initiation factor TFIIE, beta subunit | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Transcription initiation factor TFIIE, beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIE complex; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIIE, beta subunit (InterPro:IPR016656), Transcription factor TFIIE beta subunit, DNA-binding domain (InterPro:IPR003166); BEST Arabidopsis thaliana protein match is: Transcription initiation factor TFIIE, beta subunit (TAIR:AT4G20330.1); Has 322 Blast hits to 322 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 109; Plants - 70; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:11226317..11227363 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31565.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.23 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||
| Length | 275 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALREQLDKF NKQQEKCQST LSSISSSRTA LSRSYVPAAT TSQKPNVFRG KFSENTKQLQ HITNIRNSAV GAQMKIVIDL LFKTRLAYTA EQINEACYVD 101: MHNNKAVFDS LRKNPKVHYD GRRFSYKATH NIKDKKQLLS FVNKSDKVID VSDLKDAYPN VMEDLKSLKS SGEIFWLLSN TDSKEGTVYR NNMEYPKIDD 201: ELKALFRDII PSDMLEVEKE LLKIGLKPAT NIAERRAAEQ LHGVSNKPKD KKKKKKEITN RTKLTNSHML ELFQS |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)