AT4G20920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.693 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : double-stranded RNA-binding domain (DsRBD)-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RNA-binding protein Lupus La (InterPro:IPR006630), Double-stranded RNA-binding (InterPro:IPR001159); BEST Arabidopsis thaliana protein match is: double-stranded RNA binding protein-related / DsRBD protein-related (TAIR:AT4G20910.2); Has 124 Blast hits to 119 proteins in 45 species: Archae - 0; Bacteria - 65; Metazoa - 3; Fungi - 2; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11194177..11197577 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82857.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.26 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||
| Length | 743 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGEEKQTLT PKEMILQKFG VKAIYRIEEV HVSSNDCLYR CHLQLPEFSV VSNVFKRKKD SEQSAAELAL EKLGIQSQDD DDVDITVDEA WNNIVERIKY 101: IFSDEFLSVD HPLGGHLRAA LQRDGERCGS LPVSVIATFD AKINSRCKVI DPSVESDPIL LMSYVMKAAA KLPDYIVVSP HVDSLRRKKP YPPATIKALA 201: TTHVKSIKAE AVHLQCTVGG EEVVKPVTLD ISSGRYYLDI IADKLGLKDG SQVMISRTIG KTSSGYECRV YAAIPKLKSS DNSWKAREKR PIIESSHLEK 301: SRNAKASFVC GVDIHGDAIV ASVGYPWRIC CGISPNGIYK LSREAIIAAQ LPFSFTTKST WRGPFPREIL CMFCRQQQLV EPIFTISTAP VKPMSCILRS 401: YQKLKDSECD EKDSECDEKD SECDDSEYQY TSKGKEEIPE SGTGYRCEVK ILSKSQDLVL DCSSRKFYEK ENHAIQNASL NALSWLSRLF DEGDGDPLQI 501: CYTDDHLDAV FQQRILMKEA VPKGHFRNRD EMNQYEDQVR IQTITKGSLV SICYSVYLDV DADFSKDGKS KKELIESNEE IEFEVGNGSM NPHLEAVVTQ 601: LVVGQYARFL TNAPAEDLFV TAATGTQRDR SLLSDVAGFE YCVRLLGVKG PTEKRIEADF FKPSLSKQRL EYVVKHIKES SASTLVDFGC GSGSLLASIL 701: DCPTSLQTIA GVDISHKSLT RAAKIATFKN KQGSLQPQIY FTP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)