AT4G20830.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAD-binding Berberine family protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: apoplast, plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT4G20840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11155486..11157108 | ||||||||||||
| Molecular Weight (calculated) | 60290.40 Da | ||||||||||||
| IEP (calculated) | 10.04 | ||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||
| Length | 540 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLTTPPRTFV SVPFFFFFLL FLSLPLSSFS QSNSVYNSFL KCFSDKTKSP QSQITDNVFS QTNPAFSSVL RAYIRNARFN TSSTLKPTII ITPRSESHVS 101: AAVTCSKTLN FLLKIRSGGH DYDGLSYISD KPFFILDMSN IRDVSVDIAS NSAWISAGAT LGEVYYRIWE KSRVHGFPAG VCPTVGVGGH LSGGGYGNMV 201: RKFGLSVDYV EDAKIVDVNG RVLDRKAMGE DLFWAITGGG GGSYGVVLGY KVKLVPVPSV VTVFRVEQYM DSGAVDMVHK WQSVGPKTDP NLFMRMLIQP 301: VTRKKVKTVR ASVVALFLGR ADEVVALLSK EFPELGLKKE NCSEMTWFQS ALWWDNRLNA TQVDPKVFLD RNLDTSSFGK RKSDYVATAI PKKGIESLFK 401: KMIELGKIGL VFNPYGGKMA EVAVNAKPFP HRNKLFKIQY SVNWKENSAE IEKGYLNQAK VLYSFMTGFV SKNPRSSYFN YRDVDIGVND HGANSYKEGE 501: VYGRKYFGEN FDRLVKIKTA VDPGNFFRNE QSIPTLKSKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)