AT4G20810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIE complex; CONTAINS InterPro DOMAIN/s: Transcription factor TFE/TFIIEalpha, HTH domain (InterPro:IPR017919); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIE, alpha subunit (TAIR:AT4G20340.1); Has 481 Blast hits to 473 proteins in 159 species: Archae - 3; Bacteria - 16; Metazoa - 170; Fungi - 133; Plants - 89; Viruses - 9; Other Eukaryotes - 61 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11141427..11143597 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47807.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.72 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||||||||||||||
| Length | 416 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKLVAKTFY DNYTPKNNNQ KKSAKNGSGG IAVLVLDALT RRQWVREEDL AKELKLNTKQ LRTILRYFEE QQFIMRVHRK EKSSATTNGR GEDKVKVHMY 101: SYCCLDYSQI YDVIRYKLHR MKKEFKDVLE DKDNVQEYGC PNCKRKIFFH CENCNGELVM ECNKLTSEEV VVDGSDNPRS RRDHLKDLLQ NMEVRLKPLM 201: DHINRIKDLP VPSFESFPAW ETRVAKAARE NGDLNPDDTL RPQGGYGSTP MPFLGETEIE VNLGEENEDV KSDEVGDSSR RKLTPSWLIK KGMNLSDEQR 301: GEIRHEAKAD DGGSSMENGD DDRNLKDEYL KAYYAAILEE QELAEKLNQQ ESAGKVTTDI ELATSSSDRQ VGMKSKREEE EEEEASVAAN GNYKVDLNVE 401: AEEAEQDEND VDWQEC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)